Research Output 1974 2020

2019
3 Citations (Scopus)
24 Downloads (Pure)

A Comparison of Evoked and Non-evoked Functional Networks

Hebbink, J., van Blooijs, D., Huiskamp, G., Leijten, F. S. S., van Gils, S. A. & Meijer, H. G. E., 30 May 2019, In : Brain topography. 32, 3, p. 405-417 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Electric Stimulation
Causality
Epilepsy
Language
Aptitude
157 Downloads (Pure)

Automated CTC Classification, Enumeration and Pheno Typing: Where Math meets Biology

Zeune, L. L., 14 Feb 2019, Enschede: University of Twente. 207 p.

Research output: ThesisPhD Thesis - Research UT, graduation UTAcademic

Open Access
File
Tumors
Cells
Biomarkers
Image analysis
Learning algorithms
61 Downloads (Pure)

Computational Modelling and Electrical Stimulation for Epilepsy Surgery

Hebbink, J., 2019, Enschede: University of Twente. 148 p.

Research output: ThesisPhD Thesis - Research UT, graduation UTAcademic

Open Access
File
Electric Stimulation
Epilepsy
Seizures
Partial Epilepsy
Brain Diseases
1 Citation (Scopus)
16 Downloads (Pure)

Directional sinogram inpainting for limited angle tomography

Tovey, R., Benning, M., Brune, C., Lagerwerf, M. J., Collins, S. M., Leary, R. K., Midgley, P. A. & Schönlieb, C. B., 1 Feb 2019, In : Inverse problems. 35, 2, 29 p., 024004.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Inpainting
Tomography
Electron microscopy
Angle
Mammography
16 Downloads (Pure)

Homoclinic saddle to saddle-focus transitions in 4D systems

Kalia, M., Kouznetsov, I. A. & Meijer, H. G. E., Jun 2019, In : Nonlinearity. 32, 6, p. 2024-2054 31 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Homoclinic
saddles
Saddle
eigenvalues
Eigenvalue

Numerical Bifurcation Analysis of Maps: From Theory to Software

Kouznetsov, I. A. & Meijer, H. G. E., Mar 2019, Cambridge, UK: Cambridge University Press. 420 p. (Cambridge Monographs on Applied and Computational Mathematics; vol. 34)

Research output: Book/ReportBookAcademic

Bifurcation Analysis
Numerical Analysis
Bifurcation
Software
Discrete-time Dynamical Systems
Nonlinear dynamical systems
Boundary value problems
Subsystem
Model
Oscillation
44 Downloads (Pure)

Pathological responses to single pulse electrical stimuli in epilepsy: the role of feedforward inhibition

Hebbink, J., Huiskamp, G. J. M., van Gils, S. A., Leijten, F. S. S. & Meijer, H. G. E., 15 Aug 2019, (Accepted/In press) In : European journal of neuroscience.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Electric Stimulation
Epilepsy
Biomarkers
Partial Epilepsy
Electrocorticography
5 Downloads (Pure)

Robustness of a partially learned photoacoustic reconstruction algorithm

Boink, Y. E., Brune, C. & Manohar, S., 6 Mar 2019, Photons Plus Ultrasound: Imaging and Sensing 2019. Wang, L. V. & Oraevsky, A. A. (eds.). Bellingham, WA: SPIE, Vol. 10878. 7 p. 108781D. (Proceedings of SPIE; vol. 10878).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Open Access
File
Photoacoustic effect
Tomography
tomography
Neural networks
sampling
13 Downloads (Pure)

The energy deprived tripartite synapse: a biophysical model

Kalia, M., Meijer, H. G. E., van Putten, M. J. A. M., Rose, C. R. & van Gils, S. A., 2019, (Unpublished). 1 p.

Research output: Contribution to conferencePosterAcademic

File
2018
5 Citations (Scopus)
111 Downloads (Pure)

A framework for directional and higher-order reconstruction in photoacoustic tomography

Boink, Y. E., Lagerwerf, M. J., Steenbergen, W., van Gils, S. A., Manohar, S. & Brune, C., 16 Feb 2018, In : Physics in medicine and biology. 63, 4, 045018.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Tomography
Noise
Multimodal Imaging
Least-Squares Analysis
Artifacts
17 Citations (Scopus)
14 Downloads (Pure)

Circulating tumor cells, tumor-derived extracellular vesicles and plasma cytokeratins in castration-resistant prostate cancer patients

Nanou, A., Coumans, F. A. W., Dalum, G. V., Zeune, L. L., Dolling, D., Onstenk, W., Crespo, M., Fontes, M. S., Rescigno, P., Fowler, G., Flohr, P., Brune, C., Sleijfer, S., de Bono, J. S. & Terstappen, L. W. M. M., 10 Apr 2018, In : Oncotarget. 9, 27, p. 19283-19293 11 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Circulating Neoplastic Cells
Castration
Keratins
Prostatic Neoplasms
Keratin-18
29 Downloads (Pure)

Classification of cell populations in CTC enriched samples by advanced image analysis

de Wit, S., Zeune, L. L., Brune, C., van Dalum, G., Hiltermann, T. J. N., Groen, H. J. M. & Terstappen, L. W. M. M., 17 Apr 2018.

Research output: Contribution to conferencePosterOther research output

Open Access
File
1 Downloads (Pure)

Deep learning to identify circulating tumor cells by ACCEPT

Zeune, L. L., van Dalum, G., Nanou, A., Mutter-de Wit, S., Andree, K. C., Swennenhuis, J. F., Terstappen, L. W. M. M. & Brune, C., 6 Jul 2018, p. 192-193. 2 p.

Research output: Contribution to conferenceAbstractAcademic

4 Citations (Scopus)
18 Downloads (Pure)

Evoked directional network characteristics of epileptogenic tissue derived from single pulse electrical stimulation

van Blooijs, D., Leijten, F. S. S., van Rijen, P. C., Meijer, H. G. E. & Huiskamp, G. J. M., Nov 2018, In : Human brain mapping. 39, 11, p. 4611-4622 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Electric Stimulation
Seizures
Tissue
Electrode
Electrodes
1 Citation (Scopus)
25 Downloads (Pure)

Hamiltonian Boussinesq simulations for waves entering a harbor with access channel

Kurnia, R., Badriana, M. R. & van Groesen, E., 1 Mar 2018, In : Journal of waterway, port, coastal, and ocean engineering. 144, 2, 04017047.

Research output: Contribution to journalArticleAcademicpeer-review

Hamiltonians
Ports and harbors
harbor
simulation
Bathymetry
7 Citations (Scopus)
71 Downloads (Pure)

How to Agree on a CTC: Evaluating the Consensus in Circulating Tumor Cell Scoring

Zeune, L. L., de Wit, S., Berghuis, A. M. S., IJzerman, M. J., Terstappen, L. W. M. M. & Brune, C., 24 Sep 2018, In : Cytometry. Part A. 93, 12, p. 1202-1206 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Circulating Neoplastic Cells
Consensus
Learning
Technology
Physicians
16 Downloads (Pure)

Machine learning for the analysis of single pulse stimulation in electrocorticography

D’Angremont, E., Huiskamp, G. J., Leijten, F. S., Brune, C. & van Putten, M. J., 10 May 2018, p. e125.

Research output: Contribution to conferenceAbstractAcademic

Open Access
File
Electric Stimulation
Partial Epilepsy
Electroencephalography
Electrodes
Seizures

Mechanisms of vascular endothelial growth factor inhibition induced hypertension

Maki-petaja, K., Mcgeoch, A., Yang, L., Hubsch, A., Mceniery, C., Mir, F., Gajendragadkar, P., Ramenatte, N., Anandappa, G., Brune, C., Boink, Y., Bibiane-Schönlieb, C., Meyer, P., Bond, S., Wilkinson, I., Jodrell, D. & Cheriyan, J., 1 Dec 2018, p. 87-88. 2 p.

Research output: Contribution to conferenceAbstractAcademic

24 Downloads (Pure)

Numerical bifurcation analysis of double +1 multiplier in ℤ3-symmetric maps

Mazrooei-Sebdani, R., Eskandari, Z. & Meijer, H. G. E., 2 Sep 2018, In : Journal of difference equations and applications. 24, 9, p. 1402-1413

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Bifurcation (mathematics)
Bifurcation Analysis
Normal Form
Multiplier
Numerical Analysis
1 Citation (Scopus)
2 Downloads (Pure)

Numerical Bifurcation Analysis of Homoclinic Orbits Embedded in One-Dimensional Manifolds of Maps

Neirynck, N., Govaerts, W., Kouznetsov, I. A. & Meijer, H. G. E., Apr 2018, In : ACM transactions on mathematical software. 44, 3, 25.

Research output: Contribution to journalArticleAcademicpeer-review

Homoclinic Orbit
Bifurcation Analysis
Numerical Analysis
Orbits
Connecting Orbits
1 Citation (Scopus)

Risk estimators for choosing regularization parameters in ill-posed problems: Properties and limitations

Lucka, F., Proksch, K., Brune, C., Bissantz, N., Burger, M., Dette, H. & Wübbeling, F., 1 Jan 2018, In : Inverse Problems and Imaging. 12, 5, p. 1121-1155 35 p.

Research output: Contribution to journalArticleAcademicpeer-review

Regularization Parameter
Ill-posed Problem
Estimator
Regularization
Ill-posedness
14 Downloads (Pure)

Sensitivity of a partially learned model-based reconstruction algorithm

Boink, Y. E., Van Gils, S. A., Manohar, S. & Brune, C., 17 Dec 2018, 89th Annual Meeting of the International Association of Applied Mathematics and Mechanics (GAMM). 1 ed. Vol. 18. 2 p. (Proceedings in Applied Mathematics and Mechanics).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

Open Access
File
tomography
sensitivity
5 Citations (Scopus)

Variational Boussinesq model for strongly nonlinear dispersive waves

Lawrence, C., Adytia, D. & van Groesen, E., 1 Jan 2018, In : Wave motion. 76, p. 78-102 25 p.

Research output: Contribution to journalArticleAcademicpeer-review

shoals
Model
water waves
Fully Nonlinear
deep water
2017
1 Citation (Scopus)
42 Downloads (Pure)

A Rate-Reduced Neuron Model for Complex Spiking Behavior

Dijkstra, K., Kouznetsov, Y. A., van Putten, M. J. A. M. & van Gils, S. A., 11 Dec 2017, In : Journal of mathematical neuroscience. 7, 18 p., 13.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Neurons
2 Downloads (Pure)

A Space-Time Finite Element Method for Neural Field Equations with Transmission Delays

Polner, M., van der Vegt, J. J. W. & van Gils, S. A., 21 Dec 2017, In : SIAM journal on scientific computing. 39, 5, p. B797–B818

Research output: Contribution to journalArticleAcademicpeer-review

Space-time Finite Elements
Space-time
Finite element method
Delay Equations
Delay-dependent

Automated identification of circulating tumor cells by image analysis

Zeune, L. L., Dalum, G. V., Bidard, F-C., Pierga, J-Y., Fehm, T., Neubauer, H., Rack, B., Alunni-fabbroni, M., Crespo, M., de Bono, J., Terstappen, L. W. M. M. & Brune, C., 1 Jul 2017, p. 1733-1733.

Research output: Contribution to conferenceAbstractOther research output

2 Citations (Scopus)
2 Downloads (Pure)

Avoiding Internal Capsule Stimulation With a New Eight-Channel Steering Deep Brain Stimulation Lead

van Dijk, K. J., Verhagen, R., Bour, L. J., Heida, C. & Veltink, P. H., 15 Oct 2017, In : Neuromodulation. 21, 6, p. 553-561 9 p.

Research output: Contribution to journalArticleAcademicpeer-review

Internal Capsule
Deep Brain Stimulation
Subthalamic Nucleus
Clinical Trials
Lead
1 Citation (Scopus)

Combining contrast invariant L1 data fidelities with nonlinear spectral image decomposition

Zeune, L., van Gils, S. A., Terstappen, L. & Brune, C., 18 May 2017, Scale Space and Variational Methods in Computer Vision - 6th International Conference, SSVM 2017, Proceedings. Springer, Vol. 10302 LNCS. p. 80-93 14 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10302 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Image Decomposition
Spectral Decomposition
Fidelity
Spectral Response
Decomposition
8 Citations (Scopus)
28 Downloads (Pure)

Cross-scale effects of neural interactions during human neocortical seizure activity

Eissa, T. L., Dijkstra, K., Brune, C., Emerson, R. G., van Putten, M. J. A. M., Goodman, R. R., McKhann Jr., G. M., Schevon, C. A., van Drongelen, W. & van Gils, S. A., 3 Oct 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 40, p. 10761-10766

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Scale Effect
Wavefronts
Wave Front
Seizures
Interaction

Design of a Magnetic Resonance-Safe Haptic Wrist Manipulator for Movement Disorder Diagnostics

Bode, D., Mugge, W., Schouten, A. C., van Rootselaar, A-F., Bour, L. J., van der Helm, F. C. T. & Lammertse, P., Dec 2017, In : Journal of medical devices. 11, 4, MED-16-1356.

Research output: Contribution to journalArticleAcademicpeer-review

43 Downloads (Pure)

Freak Wave Formation from Phase Coherence

Latifah, A. L. & van Groesen, E., 11 Apr 2017, In : Journal of physics: Conference series. 822, 1, 012067.

Research output: Contribution to journalConference articleAcademicpeer-review

Open Access
File
phase coherence
time signals
63 Downloads (Pure)

From Single Cell to Neural Field - Dynamics on Different Scales

Dijkstra, K., 24 Mar 2017, Enschede: Koen Dijkstra. 124 p.

Research output: ThesisPhD Thesis - Research UT, graduation UTAcademic

Open Access
File
cells
spiking
brain
neurons
swelling
4 Citations (Scopus)

Hamiltonian Boussinesq formulation of wave–ship interactions

van Groesen, E. W. C. & Andonowati, A., Feb 2017, In : Applied mathematical modelling. 42, p. 133-144 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

Hamiltonians
Ship
Ships
Fluid
Momentum
6 Citations (Scopus)
40 Downloads (Pure)

High waves in Draupner seas — Part 1: numerical simulations and characterization of the seas

van Groesen, E., Turnip, P. & Kurnia, R., 1 Aug 2017, In : Journal of Ocean Engineering and Marine Energy. 3, 3, p. 233-245 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Computer simulation
simulation
sea
significant wave height
wind wave
4 Citations (Scopus)
53 Downloads (Pure)

High waves in Draupner seas — Part 2: Observation and prediction from synthetic radar images

van Groesen, E. & Wijaya, A. P., 18 Nov 2017, In : Journal of Ocean Engineering and Marine Energy. 3, p. 1-8 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Radar
radar
prediction
Ships
offshore structure
5 Citations (Scopus)

Localization for spatial–spectral implementations of 1D Analytic Boussinesq equations

Kurnia, R. & van Groesen, E., 1 Jul 2017, In : Wave motion. 72, p. 113-132 20 p.

Research output: Contribution to journalArticleAcademicpeer-review

Boussinesq Equations
nonlinearity
Nonlinearity
Fourier Integral Operators
Dam Break
14 Citations (Scopus)
27 Downloads (Pure)

Multiscale Segmentation via Bregman Distances and Nonlinear Spectral Analysis

Zeune, L. L., van Dalum, G., Terstappen, L. W. M. M., van Gils, S. A. & Brune, C., 8 Feb 2017, In : SIAM journal on imaging sciences. 10, 1, p. 111-146 36 p.

Research output: Contribution to journalArticleAcademicpeer-review

Bregman Distance
Spectral Analysis
Nonlinear Analysis
Spectrum analysis
Segmentation
64 Downloads (Pure)

Numerical Bifurcation Analysis of Double +1 Multiplier in Z3-Symmetric Maps

Mazrooei-Sebdani, R., Eskandari, Z. & Meijer, H. G. E., Feb 2017, Enschede: University of Twente, Department of Applied Mathematics. 14 p. (Memorandum / Department of Applied Mathematics; no. 2058)

Research output: Book/ReportReportOther research output

File
10 Citations (Scopus)
36 Downloads (Pure)

Phenomenological network models: Lessons for epilepsy surgery

Hebbink, J., Meijer, H., Huiskamp, G., van Gils, S. A. & Leijten, F., 4 Oct 2017, In : Epilepsia. 58, 10, p. e147-e151 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Epilepsy
Seizures
Population
Research
9 Citations (Scopus)
39 Downloads (Pure)

Quantifying HER-2 expression on Circulating Tumor Cells by ACCEPT

Zeune, L. L., van Dalum, G., Decraene, C., Proudhon, C., Fehm, T., Neubauer, H., Rack, B., Alunni-fabbroni, M., Terstappen, L. W. M. M., van Gils, S. A. & Brune, C., 30 Oct 2017, In : PLoS ONE. 12, 10, 12 p., e0186562.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
Circulating Neoplastic Cells
Tumors
Cells
Image analysis
neoplasm cells
68 Downloads (Pure)

Reconstruction and deterministic prediction of ocean waves from synthetic radar images

Wijaya, A. P., 6 Jul 2017, Enschede: University of Twente. 89 p.

Research output: ThesisPhD Thesis - Research UT, graduation UTAcademic

Open Access
File
ocean wave
radar
prediction
significant wave height
sea surface
51 Downloads (Pure)

Risk Estimators for Choosing Regularization Parameters in Ill-Posed Problems - Properties and Limitations

Lucka, F., Proksch, K., Brune, C., Bissantz, N., Burger, M., Dette, H. & Wübbeling, F., 18 Jan 2017, (Submitted) arXiv.org, p. 1-38.

Research output: Working paperProfessional

File
Estimator
Regularization
Image processing
Robustness
Discrepancy
4 Citations (Scopus)
1 Downloads (Pure)

Sparse pallidal connections shape synchrony in a network model of the basal ganglia

Schwab, B. C., van Wezel, R. J. A. & van Gils, S. A., 1 Apr 2017, In : European journal of neuroscience. 45, 8, p. 1000-1012 13 p.

Research output: Contribution to journalArticleAcademicpeer-review

Basal Ganglia
Gap Junctions
Globus Pallidus
Dopamine
Synapses
9 Citations (Scopus)

Synaptic damage underlies EEG abnormalities in postanoxic encephalopathy: A computational study

Ruijter, B. J., Hofmeijer, J., Meijer, H. G. E. & van Putten, M. J. A. M., 2017, In : Clinical neurophysiology. 128, 9, p. 1682 1695 p.

Research output: Contribution to journalArticleAcademicpeer-review

Brain Diseases
Electroencephalography
Synapses
Coma
Synaptic Transmission
1 Citation (Scopus)
48 Downloads (Pure)

Wave run-up of a possible Anak-Krakatau tsunami on planned and optimized Jakarta Sea Dike

Badriana, M. R., Bachtiar, H., Adytia, D., Sembiring, L., Andonowati & van Groesen, E., 25 Jul 2017, International Symposium on Earth Hazard and Disaster Mitigation, ISEDM 2016: The 6th Annual Symposium on Earthquake and Related Geohazard Research for Disaster Risk Reduction. Meilano, I. & Zulfakriza (eds.). AIP Publishing LLC, 4987103. (AIP Conference Proceedings; vol. 1857).

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

Open Access
File
rock intrusions
birds
explosions
troughs
lakes
2016
40 Downloads (Pure)

A 4D CT digital phantom of an individual human brain for perfusion analysis

Manniesing, R., Brune, C., van Ginneken, B. & Prokop, M., 30 Nov 2016, In : PeerJ. 4, e2683, p. 1-19 19 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
11 Citations (Scopus)
43 Downloads (Pure)

A Biophysical Model for Cytotoxic Cell Swelling

Dijkstra, K., Hofmeijer, J., van Gils, S. A. & van Putten, M. J. A. M., 23 Nov 2016, In : Journal of neuroscience. 36, 47, p. 11881-11890 10 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
File
1 Citation (Scopus)
29 Downloads (Pure)
Open Access
File
7 Citations (Scopus)
100 Downloads (Pure)

Determination of the significant wave height from shadowing in synthetic radar images

Wijaya, A. P. & van Groesen, E. W. C., 1 Mar 2016, In : Ocean engineering. 114, p. 204-215 12 p.

Research output: Contribution to journalArticleAcademicpeer-review

File