Jelmer Maarten Wolterink
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Jelmer Maarten Wolterink

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 https://orcid.org/0000-0001-5505-475X
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20142025

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  • 2025

    Preface

    Fernandez, V., Wolterink, J. M., Wiesner, D., Remedios, S., Zuo, L. & Casamitjana, A., 2025, 9th International Workshop on Simulation and Synthesis in Medical Imaging, SASHIMI 2024, held in conjunction with the 27th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2024. Vol. 15187 LNCS. p. v (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • 2024

    Brain-Shift: Unsupervised Pseudo-Healthy Brain Synthesis for Novel Biomarker Extraction in Chronic Subdural Hematoma

    Imre, B., Thibeau-Sutre, E., Reimer, J., Kho, K. & Wolterink, J. M., 4 Oct 2024, Medical Image Computing and Computer Assisted Intervention – MICCAI 2024 - 27th International Conference, Proceedings. Linguraru, M. G., Dou, Q., Feragen, A., Giannarou, S., Glocker, B., Lekadir, K. & Schnabel, J. A. (eds.). Springer, p. 34-44 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 15002 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
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    1 Downloads (Pure)

  • LaB-GATr: Geometric Algebra Transformers for Large Biomedical Surface and Volume Meshes

    Suk, J., Imre, B. & Wolterink, J. M., 2024, Medical Image Computing and Computer Assisted Intervention – MICCAI 2024: 27th International Conference, Marrakesh, Morocco, October 6–10, 2024, Proceedings, Part XII. Linguraru, M. G., Dou, Q., Feragen, A., Giannarou, S., Glocker, B., Lekadir, K. & Schnabel, J. A. (eds.). Cham: Springer, p. 185-195 11 p. (Lecture Notes in Computer Science; vol. 15012).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
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    2 Citations (Scopus)
    7 Downloads (Pure)

  • Quantifying White Matter Hyperintensity and Brain Volumes in Heterogeneous Clinical and Low-Field Portable MRI

    Laso, P., Cerri, S., Sorby-Adams, A., Guo, J., Mateen, F., Goebl, P., Wu, J., Liu, P., Li, H. B., Young, S. I., Billot, B., Puonti, O., Sze, G., Payabavash, S., DeHavenon, A., Sheth, K. N., Rosen, M. S., Kirsch, J., Strisciuglio, N. & Wolterink, J. M. & 4 others, Eshaghi, A., Barkhof, F., Kimberly, W. T. & Iglesias, J. E., 22 Aug 2024, 2024 IEEE International Symposium on Biomedical Imaging (ISBI): 27-30 May, 2024 - Athens, Greece, Megaron Athens International Conference Centre. IEEE, p. 1-5 5 p. 10635502

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
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    6 Citations (Scopus)
    35 Downloads (Pure)
  • 2023

    Dynamic Depth-Supervised NeRF for Multi-view RGB-D Operating Room Videos

    Gerats, B. G. A., Wolterink, J. M. & Broeders, I. A. M. J., 2023, Predictive Intelligence in Medicine : 6th International Workshop, PRIME 2023, Held in Conjunction with MICCAI 2023, Proceedings. Rekik, I., Adeli, E., Park, S. H., Cintas, C. & Zamzmi, G. (eds.). Cham, Switzerland: Springer, p. 218-230 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14277).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
    File
    5 Citations (Scopus)
    169 Downloads (Pure)

  • How Can Data Augmentation Improve Attribution Maps for Disease Subtype Explainability?

    Thibeau-Sutre, E., Wolterink, J. M., Colliot, O. & Burgos, N., 3 Apr 2023, SPIE Medical Imaging 2023: Image Processing. Colliot, O. & Isgum, I. (eds.). SPIE, 1246424

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
    File
    1 Citation (Scopus)
    115 Downloads (Pure)

  • Implicit Neural Representations for Modeling of Abdominal Aortic Aneurysm Progression

    Alblas, D., Hofman, M., Brune, C., Yeung, K. K. & Wolterink, J. M., 16 Jun 2023, Functional Imaging and Modeling of the Heart - 12th International Conference, FIMH 2023, Proceedings. Bernard, O., Clarysse, P., Duchateau, N., Ohayon, J. & Viallon, M. (eds.). Springer, p. 356-365 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 13958 LNCS).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
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    2 Citations (Scopus)
    104 Downloads (Pure)

  • Local Implicit Neural Representations for Multi-Sequence MRI Translation

    Chen, Y., Staring, M., Wolterink, J. M. & Tao, Q., 2023, 2023 IEEE International Symposium on Biomedical Imaging, ISBI 2023. IEEE, 5 p. (Proceedings - International Symposium on Biomedical Imaging; vol. 2023-April).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    1 Citation (Scopus)
    5 Downloads (Pure)

  • Uncertainty-based quality assurance of carotid artery segmentation

    Thibeau-Sutre, E., Alblas, D., Buurman, S., Brune, C. & Wolterink, J. M., 18 Aug 2023, (Accepted/In press) Uncertainty for Safe Utilization of Machine Learning in Medical Imaging (UNSURE).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

  • 2022

    Deep Learning-Based Carotid Artery Vessel Wall Segmentation in Black-Blood MRI Using Anatomical Priors

    Alblas, D., Brune, C. & Wolterink, J. M., 4 Apr 2022, Medical Imaging 2022: Image Processing. Colliot, O., Isgum, I., Landman, B. A. & Loew, M. H. (eds.). SPIE, Vol. 12032. 9 p. 120320Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 12032).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
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    13 Citations (Scopus)
    211 Downloads (Pure)

  • Going Off-Grid: Continuous Implicit Neural Representations for 3D Vascular Modeling

    Alblas, D., Brune, C., Yeung, K. K. & Wolterink, J. M., 2022, Statistical Atlases and Computational Models of the Heart. Regular and CMRxMotion Challenge Papers: 13th International Workshop, STACOM 2022, Held in Conjunction with MICCAI 2022, Singapore, September 18, 2022, Revised Selected Papers. Camara, O., Puyol-Antón, E., Suinesiaputra, A., Young, A., Qin, C., Sermesant, M. & Wang, S. (eds.). p. 79-90 12 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
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    11 Citations (Scopus)
    125 Downloads (Pure)

  • Mesh convolutional neural networks for wall shear stress estimation in 3D artery models

    Suk, J. M., de Haan, P., Lippe, P., Brune, C. & Wolterink, J. M., 1 Jan 2022, Statistical Atlases and Computational Models of the Heart. Multi-Disease, Multi-View, and Multi-Center Right Ventricular Segmentation in Cardiac MRI Challenge: 12th International Workshop, STACOM 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, September 27, 2021, Revised Selected Papers. Puyol Antón, E., Young, A., Suinesiaputra, A., Pop, M., Martín-Isla, C., Sermesant, M., Camara, O. & Lekadir, K. (eds.). p. 93-102 10 p.

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
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    12 Citations (Scopus)
    228 Downloads (Pure)
  • 2021

    Automatic whole-heart segmentation in 4D TAVI treatment planning CT

    Bruns, S., Wolterink, J. M., Van Den Boogert, T. P. W., Henriques, J. P., Baan, J., Planken, R. N., Išgum, I., Landman, B. A. & Išgum, I., 15 Feb 2021, Medical Imaging 2021: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, 9 p. (SPIE Conference Proceedings; vol. 11596).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
    File
    2 Citations (Scopus)
    303 Downloads (Pure)

  • Combined analysis of coronary arteries and the left ventricular myocardium in cardiac CT angiography for detection of patients with functionally significant stenosis

    Zreik, M., Hampe, N., Leiner, T., Khalili, N., Wolterink, J. M., Voskuil, M., Viergever, M. A., Išgum, I., Landman, B. A. (Editor) & Išgum, I. (Editor), 15 Feb 2021, Medical Imaging 2021: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, 9 p. (SPIE Cofnerence Proceedings; vol. 11596).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
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    3 Citations (Scopus)
    114 Downloads (Pure)

  • Graph attention networks for segment labeling in coronary artery trees

    Hampe, N., Wolterink, J. M., Collet, C., Planken, R. N., Išgum, I., Landman, B. A. & Išgum, I., 15 Feb 2021, Medical Imaging 2021. Isgum, I. & Landman, B. A. (eds.). SPIE, 8 p. (Proceedings of SPIE; vol. 11596).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
    File
    9 Citations (Scopus)
    611 Downloads (Pure)
  • 2020

    Automatic online quality control of synthetic CTs

    van Harten, L. D., Wolterink, J. M., Verhoeff, J. J. C. & Išgum, I., 2020, Medical Imaging 2020: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, 2549286. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11313).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    5 Citations (Scopus)

  • Exploiting clinically available delineations for cnn-based segmentation in radiotherapy treatment planning

    van Harten, L. D., Wolterink, J. M., Verhoeff, J. J. C. & Išgum, I., 2020, Medical Imaging 2020: Image Processing. Isgum, I. & Landman, B. A. (eds.). SPIE, 2549653. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 11313).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    1 Citation (Scopus)
  • 2019

    Adversarial Optimization for Joint Registration and Segmentation in Prostate CT Radiotherapy

    Elmahdy, M. S., Wolterink, J. M., Sokooti, H., Išgum, I. & Staring, M., 1 Jan 2019, Medical Image Computing and Computer Assisted Intervention – MICCAI 2019: 22nd International Conference, Shenzhen, China, October 13–17, 2019, Proceedings. Shen, D., Yap, P.-T., Liu, T., Peters, T. M., Khan, A., Staib, L. H., Essert, C. & Zhou, S. (eds.). Cham: Springer, Vol. VI. p. 366-374 9 p. (Lecture Notes in Computer Science; vol. 11769).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
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    30 Citations (Scopus)
    14 Downloads (Pure)

  • Automatic segmentation of organs at risk in thoracic CT scans by combining 2D and 3D convolutional neural networks

    van Harten, L. D., Noothout, J. M. H., Verhoeff, J. J. C., Wolterink, J. M. & Išgum, I., 2019, SegTHOR 2019: Proceedings of the 2019 Challenge on Segmentation of THoracic Organs at Risk in CT Images (SegTHOR2019). Petitjean, C., Ruan, S., Lamber, Z. & Dubray, B. (eds.). CEUR, 4 p. (CEUR workshop proceedings; vol. 2349).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    Open Access
    File
    2 Citations (Scopus)
    462 Downloads (Pure)

  • Graph Convolutional Networks for Coronary Artery Segmentation in Cardiac CT Angiography

    Wolterink, J. M., Leiner, T. & Išgum, I., 1 Jan 2019, Graph Learning in Medical Imaging: 1st International Workshop, GLMI 2019, held in Conjunction with MICCAI 2019, Proceedings. Zhang, D., Zhou, L., Jie, B. & Liu, M. (eds.). Cham: Springer, p. 62-69 8 p. (Lecture Notes in Computer Science; vol. 11849).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    57 Citations (Scopus)

  • Improving myocardium segmentation in cardiac CT angiography using spectral information

    Bruns, S., Wolterink, J. M., van Hamersvelt, R. W., Zreik, M., Leiner, T. & Išgum, I., 1 Jan 2019, Medical Imaging 2019: Image Processing. Angelini, E. D. & Landman, B. A. (eds.). Bellingham, WA: SPIE, 7 p. 109492M. (Proceedings of SPIE; vol. 10949).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    8 Citations (Scopus)

  • Towards increased trustworthiness of deep learning segmentation methods on cardiac MRI

    Sander, J., de Vos, B. D., Wolterink, J. M. & Išgum, I., 1 Jan 2019, Medical Imaging 2019: Image Processing. Angelini, E. D. & Landman, B. A. (eds.). Bellingham, WA: SPIE, 7 p. 1094919. (Proceedings of SPIE; vol. 10949).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    43 Citations (Scopus)
  • 2018

    Automatic segmentation and disease classification using cardiac cine MR images

    Wolterink, J. M., Leiner, T., Viergever, M. A. & Išgum, I., 1 Jan 2018, Statistical Atlases and Computational Models of the Heart: ACDC and MMWHS Challenges - 8th International Workshop, STACOM 2017, Revised Selected Papers. Bernard, O., Jodoin, P.-M., Zhuang, X., Yang, G., Young, A., Sermesant, M., Lalande, A. & Pop, M. (eds.). Cham: Springer, p. 101-110 10 p. (Lecture Notes in Computer Science; vol. 10663).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    88 Citations (Scopus)
    12 Downloads (Pure)

  • Automatic segmentation of thoracic aorta segments in low-dose chest CT

    Noothout, J. M. H., De Vos, B. D., Wolterink, J. M. & Išgum, I., 1 Jan 2018, Medical Imaging 2018: Image Processing. Angelini, E. D., Angelini, E. D. & Landman, B. A. (eds.). SPIE, 105741S. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 10574).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    33 Citations (Scopus)
  • 2017

    Deep MR to CT synthesis using unpaired data

    Wolterink, J. M., Dinkla, A. M., Savenije, M. H. F., Seevinck, P. R., van den Berg, C. A. T. & Išgum, I., 1 Jan 2017, Simulation and Synthesis in Medical Imaging: Second International Workshop, SASHIMI 2017, Held in Conjunction with MICCAI 2017, Québec City, QC, Canada, September 10, 2017, Proceedings. Gooya, A., Frangi, A. F., Tsaftaris, S. A. & Prince, J. L. (eds.). Cham: Springer, p. 14-23 10 p. (Lecture Notes in Computer Science; vol. 10557).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    470 Citations (Scopus)

  • Dilated convolutional neural networks for cardiovascular MR segmentation in congenital heart disease

    Wolterink, J. M., Leiner, T., Viergever, M. A. & Išgum, I., 1 Jan 2017, Reconstruction, Segmentation, and Analysis of Medical Images: First International Workshops, RAMBO 2016 and HVSMR 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 17, 2016, Revised Selected Papers. Zuluaga, M. A., Moghari, M. H., Pace, D. F., Kainz, B. & Bhatia, K. (eds.). Cham: Springer, p. 95-102 8 p. (Lecture Notes in Computer Science; vol. 10129).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    59 Citations (Scopus)
  • 2016

    2D image classification for 3D anatomy localization: Employing deep convolutional neural networks

    De Vos, B. D., Wolterink, J. M., De Jong, P. A., Viergever, M. A. & Išgum, I., 2016, Medical Imaging 2016: Image Processing. Styner, M. A., Angelini, E. D. & Angelini, E. D. (eds.). SPIE, 97841Y. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9784).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    87 Citations (Scopus)

  • Automatic detection of cardiovascular risk in CT attenuation correction maps in Rb-82 PET/CTs

    Išgum, I., De Vos, B. D., Wolterink, J. M., Dey, D., Berman, D. S., Rubeaux, M., Leiner, T. & Slomka, P. J., 2016, Medical Imaging 2016: Image Processing. Styner, M. A., Angelini, E. D. & Angelini, E. D. (eds.). SPIE, 978405. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9784).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    1 Citation (Scopus)

  • Deep learning for multi-task medical image segmentation in multiple modalities

    Moeskops, P., Wolterink, J. M., van der Velden, B. H. M., Gilhuijs, K. G. A., Leiner, T., Viergever, M. A. & Išgum, I., 1 Jan 2016, Medical Image Computing and Computer-Assisted Intervention - MICCAI 2016: 19th International Conference, Athens, Greece, October 17-21, 2016, Proceedings. Unal, G., Ourselin, S., Joskowicz, L., Sabuncu, M. R. & Wells, W. (eds.). Cham: Springer, Vol. II. p. 478-486 9 p. (Lecture Notes in Computer Science; vol. 9901)(Image Processing, Computer Vision, Pattern Recognition, and Graphics).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    287 Citations (Scopus)
  • 2015

    Automatic machine learning based prediction of cardiovascular events in lung cancer screening data

    De Vos, B. D., De Jong, P. A., Wolterink, J. M., Vliegenthart, R., Wielingen, G. V. F., Viergever, M. A. & Išgum, I., 2015, Medical Imaging 2015: Computer-Aided Diagnosis. Hadjiiski, L. M., Hadjiiski, L. M., Tourassi, G. D. & Tourassi, G. D. (eds.). SPIE, 94140D. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9414).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    4 Citations (Scopus)
  • 2014

    An automatic machine learning system for coronary calcium scoring in clinical non-contrast enhanced, ECG-triggered cardiac CT

    Wolterink, J. M., Leiner, T., Takx, R. A. P., Viergever, M. A. & Išgum, I., 2014, Medical Imaging 2014: Computer-Aided Diagnosis. SPIE, 90350E. (Progress in Biomedical Optics and Imaging - Proceedings of SPIE; vol. 9035).

    Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

    16 Citations (Scopus)