Research Output 2010 2017

Filter
Conference contribution
2017

How to Efficiently Build a Front-End Tool for UPPAAL: A Model-Driven Approach

Schivo, S., Yildiz, B. M., Ruijters, E. J. J., Gerking, C., Kumar, R., Dziwok, S., Rensink, A. & Stoelinga, M. I. A. Oct 2017 Dependable Software Engineering. Theories, Tools, and Applications: Third International Symposium, SETTA 2017, Changsha, China, October 23-25, 2017, Proceedings. Larsen, K., Sokolsky, O. & Wang, J. (eds.). Springer, p. 319-336 (Lecture Notes in Computer Science; vol. 10606)

Research output: Scientific - peer-reviewConference contribution

Query languages
Hardware

Improving the Timed Automata Approach to Biological Pathway Dynamics

Langerak, R., Pol, J. V. D., Post, J. N. & Schivo, S. 19 Aug 2017 Models, Algorithms, Logics and Tools: Essays Dedicated to Kim Guldstrand Larsen on the Occasion of His 60th Birthday. Aceto, L., Bacci, G., Bacci, G., Ingólfsdóttir, A., Legay, A. & Mardare, R. (eds.). Springer, p. 96-111 16 p. (Lecture Notes in Computer Science; vol. 10460)

Research output: Scientific - peer-reviewConference contribution

Computer science
Model checking
Biological systems
User interfaces
Genes
2015
Castration
Prostatic Neoplasms
Circulating Neoplastic Cells
Statistical Models
Physicians

PRM113 - Timed Automata Modeling of The Personalized Treatment Decisions In Metastatic Castration Resistant Prostate Cancer

Schivo, S., Degeling, K., Degeling, K., Koffijberg, H., IJzerman, M. J. & Langerak, R. Nov 2015 ISPOR 18th Annual European Congress Research Abstracts. Amsterdam: International Society for Pharmacoeconomics and Outcomes Research (ISPOR), p. A702-A703 (Value in Health; vol. 18, no. 7)

Research output: ScientificConference contribution

Timed automata
Model
Automata
Prostate cancer
Model checking
2014

An ECHO in biology: Validating the Executable CHondrocyte

Scholma, J., Schivo, S., Karperien, H. B. J., Langerak, R., van de Pol, J. C. & Post, J. N. 1 Apr 2014 2014 World Congress on Osteoarthritis. Amsterdam: ELSEVIER, p. S157-S157 1 p. (Osteoarthritis and Cartilage; vol. 22)

Research output: ScientificConference contribution

Chondrocytes
Cartilage
Osteoarthritis
beta Catenin
Articular Cartilage

ECHO: the executable chondrocyte

Scholma, J., Schivo, S., Kerkhofs, J., Langerak, R., Karperien, H. B. J., van de Pol, J. C., Geris, L. & Post, J. N. 9 Jun 2014 Tissue Engineering & Regenerative Medicine International Society, European Chapter Meeting. Malden: Wiley, p. 54-54 1 p. (s1; vol. 8)

Research output: ScientificConference contribution

Chondrocytes
Articular Cartilage
Cartilage
Phenotype
Molecular Dynamics Simulation
6 Citations

Setting Parameters for Biological Models With ANIMO

Schivo, S., Scholma, J., Karperien, H. B. J., Post, J. N., van de Pol, J. C. & Langerak, R. 8 Apr 2014 Proceedings 1st International Workshop on Synthesis of Continuous Parameters. André, É. & Frehse, G. (eds.). Open Publishing Association, p. 35-47 13 p. (Electronic Proceedings in Theoretical Computer Science; vol. 145)

Research output: Scientific - peer-reviewConference contribution

Topology
Genes
2013

Mathematical modeling of signaling pathways in osteoarthritis

Scholma, J., Kerkhofs, J., Schivo, S., Langerak, R., van der Vet, P. E., Karperien, H. B. J., van de Pol, J. C., Geris, L. & Post, J. N. 19 Apr 2013 2013 Osteoarthritis Research Society International (OARSI) World Congress. Lohmander, S. (ed.). Amsterdam: ELSEVIER, p. - 1 p. (S123; vol. 21, no. Suppl.)

Research output: ScientificConference contribution

Cartilage
Growth Plate
Articular Cartilage
Chondrocytes
Transcriptome
2012
9 Citations

Modelling biological pathway dynamics with Timed Automata

Schivo, S., Scholma, J., Wanders, B., Urquidi Camacho, R. A., van der Vet, P. E., Karperien, H. B. J., Langerak, R., van de Pol, J. C. & Post, J. N. Nov 2012 2012 IEEE 12th International Conference on Bioinformatics and Bioengineering (BIBE 2012). IEEE Computer Society, p. 447-453 7 p.

Research output: Scientific - peer-reviewConference contribution

Crosstalk
Reaction kinetics
User interfaces
Semantics
Engines
2010
2 Citations

Approximate Model Checking of Stochastic COWS

Quaglia, P. & Schivo, S. 2010 5th International Symposium on Trustworthly Global Computing, TGC 2010. Berlin: Springer Verlag, p. 335-347 13 p. (Lecture Notes in Computer Science; vol. 6084)

Research output: Scientific - peer-reviewConference contribution

Model checking
Sampling