Analysing scientific workflows: why workflows not only connect web services

I. Wassink, P.E. van der Vet, K. Wolstencroft, P.B.T. Neerincx, M. Roos, H. Rauwerda, T.M. Breit

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

    26 Citations (Scopus)
    66 Downloads (Pure)

    Abstract

    Life science workflow systems are developed to help life scientists to conveniently connect various programs and web services. In practice however, much time is spent on data conversion, because web services provided by different organisations use different data formats. We have analysed all the Taverna workflows available at the myExperiment web site on December 11, 2008. Our analysis of the tasks in these workflows shows several noticeable aspects: their number ranges from 1 to 70 tasks per workflow; 18% of the workflows consist of a single task. Of the tasks used are 22% web services; local services, i.e. tasks executed by the workflow system itself, are very popular and cover 57% of tasks; tasks implemented by the workflow designer, scripting tasks, are is also used often (14%). Our analysis shows that over 30% of tasks are related to dataconversion.
    Original languageUndefined
    Title of host publicationIEEE Congress on Services 2009
    EditorsLJ. Zhang
    Place of PublicationLos Alamitos
    PublisherIEEE Computer Society Press
    Pages314-321
    Number of pages8
    ISBN (Print)978-0-7695-3708-5
    DOIs
    Publication statusPublished - 10 Jul 2009
    Event2009 IEEE Congress on Services, SERVICES 2009 - Los Angeles, United States
    Duration: 6 Jul 200910 Jul 2009
    http://www.servicescongress.org/2009/1/index.html

    Publication series

    Name
    PublisherIEEE Computer Society Press

    Conference

    Conference2009 IEEE Congress on Services, SERVICES 2009
    Abbreviated titleSERVICES
    CountryUnited States
    CityLos Angeles
    Period6/07/0910/07/09
    Internet address

    Keywords

    • METIS-263918
    • IR-67519
    • data conversion
    • sub-workflow
    • EWI-15690
    • Scientific workflow
    • Scripting
    • HMI-HF: Human Factors
    • HMI-CI: Computational Intelligence
    • Web Services

    Cite this

    Wassink, I., van der Vet, P. E., Wolstencroft, K., Neerincx, P. B. T., Roos, M., Rauwerda, H., & Breit, T. M. (2009). Analysing scientific workflows: why workflows not only connect web services. In LJ. Zhang (Ed.), IEEE Congress on Services 2009 (pp. 314-321). [10.1109/SERVICES-I.2009.48] Los Alamitos: IEEE Computer Society Press. https://doi.org/10.1109/SERVICES-I.2009.48
    Wassink, I. ; van der Vet, P.E. ; Wolstencroft, K. ; Neerincx, P.B.T. ; Roos, M. ; Rauwerda, H. ; Breit, T.M. / Analysing scientific workflows: why workflows not only connect web services. IEEE Congress on Services 2009. editor / LJ. Zhang. Los Alamitos : IEEE Computer Society Press, 2009. pp. 314-321
    @inproceedings{06e08d91ebe84f98821d1237b9f9421f,
    title = "Analysing scientific workflows: why workflows not only connect web services",
    abstract = "Life science workflow systems are developed to help life scientists to conveniently connect various programs and web services. In practice however, much time is spent on data conversion, because web services provided by different organisations use different data formats. We have analysed all the Taverna workflows available at the myExperiment web site on December 11, 2008. Our analysis of the tasks in these workflows shows several noticeable aspects: their number ranges from 1 to 70 tasks per workflow; 18{\%} of the workflows consist of a single task. Of the tasks used are 22{\%} web services; local services, i.e. tasks executed by the workflow system itself, are very popular and cover 57{\%} of tasks; tasks implemented by the workflow designer, scripting tasks, are is also used often (14{\%}). Our analysis shows that over 30{\%} of tasks are related to dataconversion.",
    keywords = "METIS-263918, IR-67519, data conversion, sub-workflow, EWI-15690, Scientific workflow, Scripting, HMI-HF: Human Factors, HMI-CI: Computational Intelligence, Web Services",
    author = "I. Wassink and {van der Vet}, P.E. and K. Wolstencroft and P.B.T. Neerincx and M. Roos and H. Rauwerda and T.M. Breit",
    note = "http://eprints.ewi.utwente.nl/15690",
    year = "2009",
    month = "7",
    day = "10",
    doi = "10.1109/SERVICES-I.2009.48",
    language = "Undefined",
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    Wassink, I, van der Vet, PE, Wolstencroft, K, Neerincx, PBT, Roos, M, Rauwerda, H & Breit, TM 2009, Analysing scientific workflows: why workflows not only connect web services. in LJ Zhang (ed.), IEEE Congress on Services 2009., 10.1109/SERVICES-I.2009.48, IEEE Computer Society Press, Los Alamitos, pp. 314-321, 2009 IEEE Congress on Services, SERVICES 2009, Los Angeles, United States, 6/07/09. https://doi.org/10.1109/SERVICES-I.2009.48

    Analysing scientific workflows: why workflows not only connect web services. / Wassink, I.; van der Vet, P.E.; Wolstencroft, K.; Neerincx, P.B.T.; Roos, M.; Rauwerda, H.; Breit, T.M.

    IEEE Congress on Services 2009. ed. / LJ. Zhang. Los Alamitos : IEEE Computer Society Press, 2009. p. 314-321 10.1109/SERVICES-I.2009.48.

    Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

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    AU - Wolstencroft, K.

    AU - Neerincx, P.B.T.

    AU - Roos, M.

    AU - Rauwerda, H.

    AU - Breit, T.M.

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    AB - Life science workflow systems are developed to help life scientists to conveniently connect various programs and web services. In practice however, much time is spent on data conversion, because web services provided by different organisations use different data formats. We have analysed all the Taverna workflows available at the myExperiment web site on December 11, 2008. Our analysis of the tasks in these workflows shows several noticeable aspects: their number ranges from 1 to 70 tasks per workflow; 18% of the workflows consist of a single task. Of the tasks used are 22% web services; local services, i.e. tasks executed by the workflow system itself, are very popular and cover 57% of tasks; tasks implemented by the workflow designer, scripting tasks, are is also used often (14%). Our analysis shows that over 30% of tasks are related to dataconversion.

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    Wassink I, van der Vet PE, Wolstencroft K, Neerincx PBT, Roos M, Rauwerda H et al. Analysing scientific workflows: why workflows not only connect web services. In Zhang LJ, editor, IEEE Congress on Services 2009. Los Alamitos: IEEE Computer Society Press. 2009. p. 314-321. 10.1109/SERVICES-I.2009.48 https://doi.org/10.1109/SERVICES-I.2009.48