Analysing scientific workflows: why workflows not only connect web services

I. Wassink; P.E. van der Vet; K. Wolstencroft; P.B.T. Neerincx; M. Roos; H. Rauwerda; T.M. Breit

doi:10.1109/SERVICES-I.2009.48

Analysing scientific workflows: why workflows not only connect web services

I. Wassink, P.E. van der Vet, K. Wolstencroft, P.B.T. Neerincx, M. Roos, H. Rauwerda, T.M. Breit

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

31 Citations (Scopus)

150 Downloads (Pure)

Abstract

Life science workflow systems are developed to help life scientists to conveniently connect various programs and web services. In practice however, much time is spent on data conversion, because web services provided by different organisations use different data formats. We have analysed all the Taverna workflows available at the myExperiment web site on December 11, 2008. Our analysis of the tasks in these workflows shows several noticeable aspects: their number ranges from 1 to 70 tasks per workflow; 18% of the workflows consist of a single task. Of the tasks used are 22% web services; local services, i.e. tasks executed by the workflow system itself, are very popular and cover 57% of tasks; tasks implemented by the workflow designer, scripting tasks, are is also used often (14%). Our analysis shows that over 30% of tasks are related to dataconversion.

Original language	Undefined
Title of host publication	IEEE Congress on Services 2009
Editors	LJ. Zhang
Place of Publication	Los Alamitos
Publisher	IEEE Computer Society Press
Pages	314-321
Number of pages	8
ISBN (Print)	978-0-7695-3708-5
DOIs	https://doi.org/10.1109/SERVICES-I.2009.48
Publication status	Published - 10 Jul 2009
Event	2009 IEEE Congress on Services, SERVICES 2009 - Los Angeles, United States Duration: 6 Jul 2009 → 10 Jul 2009 http://www.servicescongress.org/2009/1/index.html

Publication series

Name
Publisher	IEEE Computer Society Press

Conference

Conference	2009 IEEE Congress on Services, SERVICES 2009
Abbreviated title	SERVICES
Country/Territory	United States
City	Los Angeles
Period	6/07/09 → 10/07/09
Internet address	http://www.servicescongress.org/2009/1/index.html

Keywords

METIS-263918
IR-67519
data conversion
sub-workflow
EWI-15690
Scientific workflow
Scripting
HMI-HF: Human Factors
HMI-CI: Computational Intelligence
Web Services

Access to Document

10.1109/SERVICES-I.2009.48

Cite this

@inproceedings{06e08d91ebe84f98821d1237b9f9421f,

title = "Analysing scientific workflows: why workflows not only connect web services",

abstract = "Life science workflow systems are developed to help life scientists to conveniently connect various programs and web services. In practice however, much time is spent on data conversion, because web services provided by different organisations use different data formats. We have analysed all the Taverna workflows available at the myExperiment web site on December 11, 2008. Our analysis of the tasks in these workflows shows several noticeable aspects: their number ranges from 1 to 70 tasks per workflow; 18% of the workflows consist of a single task. Of the tasks used are 22% web services; local services, i.e. tasks executed by the workflow system itself, are very popular and cover 57% of tasks; tasks implemented by the workflow designer, scripting tasks, are is also used often (14%). Our analysis shows that over 30% of tasks are related to dataconversion.",

keywords = "METIS-263918, IR-67519, data conversion, sub-workflow, EWI-15690, Scientific workflow, Scripting, HMI-HF: Human Factors, HMI-CI: Computational Intelligence, Web Services",

author = "I. Wassink and {van der Vet}, P.E. and K. Wolstencroft and P.B.T. Neerincx and M. Roos and H. Rauwerda and T.M. Breit",

note = "http://eprints.ewi.utwente.nl/15690 ; null ; Conference date: 06-07-2009 Through 10-07-2009",

year = "2009",

month = jul,

day = "10",

doi = "10.1109/SERVICES-I.2009.48",

language = "Undefined",

isbn = "978-0-7695-3708-5",

publisher = "IEEE Computer Society Press",

pages = "314--321",

editor = "LJ. Zhang",

booktitle = "IEEE Congress on Services 2009",

url = "http://www.servicescongress.org/2009/1/index.html",

}

Wassink, I, van der Vet, PE, Wolstencroft, K, Neerincx, PBT, Roos, M, Rauwerda, H & Breit, TM 2009, Analysing scientific workflows: why workflows not only connect web services. in LJ Zhang (ed.), IEEE Congress on Services 2009., 10.1109/SERVICES-I.2009.48, IEEE Computer Society Press, Los Alamitos, pp. 314-321, 2009 IEEE Congress on Services, SERVICES 2009, Los Angeles, California, United States, 6/07/09. https://doi.org/10.1109/SERVICES-I.2009.48

Analysing scientific workflows: why workflows not only connect web services. / Wassink, I.; van der Vet, P.E.; Wolstencroft, K.; Neerincx, P.B.T.; Roos, M.; Rauwerda, H.; Breit, T.M.

IEEE Congress on Services 2009. ed. / LJ. Zhang. Los Alamitos : IEEE Computer Society Press, 2009. p. 314-321 10.1109/SERVICES-I.2009.48.

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

TY - GEN

T1 - Analysing scientific workflows: why workflows not only connect web services

AU - Wassink, I.

AU - van der Vet, P.E.

AU - Wolstencroft, K.

AU - Neerincx, P.B.T.

AU - Roos, M.

AU - Rauwerda, H.

AU - Breit, T.M.

N1 - http://eprints.ewi.utwente.nl/15690

PY - 2009/7/10

Y1 - 2009/7/10

N2 - Life science workflow systems are developed to help life scientists to conveniently connect various programs and web services. In practice however, much time is spent on data conversion, because web services provided by different organisations use different data formats. We have analysed all the Taverna workflows available at the myExperiment web site on December 11, 2008. Our analysis of the tasks in these workflows shows several noticeable aspects: their number ranges from 1 to 70 tasks per workflow; 18% of the workflows consist of a single task. Of the tasks used are 22% web services; local services, i.e. tasks executed by the workflow system itself, are very popular and cover 57% of tasks; tasks implemented by the workflow designer, scripting tasks, are is also used often (14%). Our analysis shows that over 30% of tasks are related to dataconversion.

AB - Life science workflow systems are developed to help life scientists to conveniently connect various programs and web services. In practice however, much time is spent on data conversion, because web services provided by different organisations use different data formats. We have analysed all the Taverna workflows available at the myExperiment web site on December 11, 2008. Our analysis of the tasks in these workflows shows several noticeable aspects: their number ranges from 1 to 70 tasks per workflow; 18% of the workflows consist of a single task. Of the tasks used are 22% web services; local services, i.e. tasks executed by the workflow system itself, are very popular and cover 57% of tasks; tasks implemented by the workflow designer, scripting tasks, are is also used often (14%). Our analysis shows that over 30% of tasks are related to dataconversion.

KW - METIS-263918

KW - IR-67519

KW - data conversion

KW - sub-workflow

KW - EWI-15690

KW - Scientific workflow

KW - Scripting

KW - HMI-HF: Human Factors

KW - HMI-CI: Computational Intelligence

KW - Web Services

U2 - 10.1109/SERVICES-I.2009.48

DO - 10.1109/SERVICES-I.2009.48

M3 - Conference contribution

SN - 978-0-7695-3708-5

SP - 314

EP - 321

BT - IEEE Congress on Services 2009

A2 - Zhang, LJ.

PB - IEEE Computer Society Press

CY - Los Alamitos

Y2 - 6 July 2009 through 10 July 2009

ER -