TY - JOUR
T1 - Automation of hemocompatibility analysis using image segmentation and supervised classification
AU - Clauser, Johanna
AU - Maas, Judith
AU - Arens, Jutta
AU - Schmitz-Rode, Thomas
AU - Steinseifer, Ulrich
AU - Berkels, Benjamin
N1 - Funding Information:
The authors like to thank Dr. Doris Keller from the University Medical Center RWTH Aachen University for the blood withdrawal and Leyla Haferkamp from the RWTH Aachen University Language Center for proof reading. Calculations were performed with computing resources granted by RWTH Aachen University under project rwth0314. The authors have no competing interests to declare. This study was partly funded by the INTERREG Program V-A Euregio Maas-Rhine of the European Union (Grant Number 2016/98602). B. Berkels was funded in part by the Excellence Initiative of the German Federal and State Governments through grant GSC 111. This article comprises results and figures that a part of the PhD Thesis from Johanna C. Clauser, submitted at RWTH Aachen University, Germany, in 2019 (Clauser, 2019).
Funding Information:
This study was partly funded by the INTERREG Program V-A Euregio Maas-Rhine of the European Union (Grant Number 2016/98602 ).
Funding Information:
B. Berkels was funded in part by the Excellence Initiative of the German Federal and State Governments through grant GSC 111 .
Publisher Copyright:
© 2020 Elsevier Ltd
PY - 2021/1/1
Y1 - 2021/1/1
N2 - The hemocompatibility of blood-contacting medical devices remains one of the major challenges in biomedicalengineering and makes research in the field of new and improved materials inevitable. However, current in-vitro test and analysis methods are still lacking standardization and comparability, which impedes advancesin material design. For example, the optical platelet analysis of material in-vitro hemocompatibility tests iscarried out manually or semi-manually by each research group individually.As a step towards standardization, this paper proposes an automation approach for the optical platelet countand analysis. To this end, fluorescence images are segmented using Zach’s convexification of the multiphase-phase piecewise constant Mumford–Shah model. The non-background components then need to be classified asplatelet or no platelet. For this purpose, a supervised random forest is applied to feature vectors derived fromthe components using features like area, perimeter and circularity. With an overall high accuracy (>93%) andlow error rates (≤5%), the random forest achieves reliable results. This is supported by high areas under thereceiver–operator characteristic curve (≥0.94) and the prediction–recall curve (≥0.77), respectively.We developed a novel method for a fast, user-independent and reproducible analysis of material hemocom-patibility tests. The automatized analysis method overcomes the current obstacles in the way of standardizedin-vitro material testing and is therefore a unique and powerful tool for advances in biomaterial research.
AB - The hemocompatibility of blood-contacting medical devices remains one of the major challenges in biomedicalengineering and makes research in the field of new and improved materials inevitable. However, current in-vitro test and analysis methods are still lacking standardization and comparability, which impedes advancesin material design. For example, the optical platelet analysis of material in-vitro hemocompatibility tests iscarried out manually or semi-manually by each research group individually.As a step towards standardization, this paper proposes an automation approach for the optical platelet countand analysis. To this end, fluorescence images are segmented using Zach’s convexification of the multiphase-phase piecewise constant Mumford–Shah model. The non-background components then need to be classified asplatelet or no platelet. For this purpose, a supervised random forest is applied to feature vectors derived fromthe components using features like area, perimeter and circularity. With an overall high accuracy (>93%) andlow error rates (≤5%), the random forest achieves reliable results. This is supported by high areas under thereceiver–operator characteristic curve (≥0.94) and the prediction–recall curve (≥0.77), respectively.We developed a novel method for a fast, user-independent and reproducible analysis of material hemocom-patibility tests. The automatized analysis method overcomes the current obstacles in the way of standardizedin-vitro material testing and is therefore a unique and powerful tool for advances in biomaterial research.
KW - Random forest
KW - Standardization
KW - In-vitro test
KW - Segmentation
KW - Platelet characterization
U2 - 10.1016/j.engappai.2020.104009
DO - 10.1016/j.engappai.2020.104009
M3 - Article
VL - 97
JO - Engineering applications of artificial intelligence
JF - Engineering applications of artificial intelligence
SN - 0952-1976
M1 - 104009
ER -