Circulating Tumor Cells a Real-Time Liquid Biopsy

Research output: ThesisPhD Thesis - Research UT, graduation UTAcademic

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Abstract

Cancer is one of the leading causes of death worldwide. For adequate and effective treatment a correct cancer diagnosis is essential. Traditionally, this is done by means of imaging (e.g. ultrasound, CT, MRI scan) and lab tests followed by confirmation through a biopsy of the tumor. Next to these traditional methods, circulating tumor cells can be isolated from blood and used as a liquid biopsy providing a source of information on the tumor characteristics. Circulating tumor cells (CTC) are cells that shed from a tumor site, enter the bloodstream, spread through the body and can form metastases at distant sites. CTC have important prognostic and therapeutic implications but as their numbers are very small, detection is very difficult. CTC are found in frequencies in the order of 1 - 10 CTC per mL of whole blood in patients with metastatic disease. For comparison, 1 mL of blood contains around 5 million white blood cells and around 5 billion red blood cells. Current technologies, like CellSearch, usually isolate CTC from 7.5 mL of blood. Big advantage over traditional tissue biopsies, where often surgery is required, is that sampling blood for CTC isolation is less invasive and can be done repeatedly thereby allowing a source of real-time information during the course of disease. However, in many patients non or very few CTC are detected in 7.5 mL but predictions suggest that all patients including those who do not have detectable CTC have at least 1 CTC in 5 L of blood. Increasing the processed blood volume would theoretically lead to an overall higher yield of CTC providing a sufficient source of tumor material.
In this dissertation we investigated techniques allowing for the isolation and characterization of CTC from large volumes of blood which would be very beneficial for realizing a successful real-time liquid biopsy.
First, we looked into techniques where antibody functionalized surfaces, targeting CTC, are used to capture tumor cells from blood. For this, the affinity and epitope binding competition of 4 different α-EpCAM antibodies were measured. Next, the optimal antibody and set-up conditions were determined to capture cells on these surfaces and the successful capture of tumor cells from blood was shown. The advantage is that this approach allows us to flow blood, rather than using static conditions, making it possible to process larger volumes.
To characterize tumor cells isolated from blood we developed and evaluated a method using self-seeding microwells to obtain single CTC and assess their potential to proliferate. Using this method we were able to isolate and detect viable CTC from patient blood samples.
Next, within the CTCTrap consortium we investigated the use of a therapeutic apheresis, for the collection of CTC from peripheral blood in cancer patients. The goal within this consortium was to develop a new apheresis column to capture CTC and then reintroduce the blood depleted of tumor cells back into the body with the promise to obtain CTC in all metastatic cancer patients. Unfortunately, the device developed in this project showed a very low recovery of tumor cells and a high carryover of leukocytes in the processed samples, resulting in no enrichment of tumor cells. Alternatively, the use of diagnostic leukapheresis (DLA) was introduced. During DLA mononuclear cells, including CTC, are isolated from patient blood, which results in a product of approximately 60 mL which holds the cells of 2 L of blood. This approach allows us to process liters of blood. Various approaches were pursued to process these large blood volumes from leukapheresis products as current technologies can only process a small portion. This resulted in the development of a leukocyte depletion protocol based on the commercially available RosetteSep kit for the isolation of CTC from large volumes.
The use of DLA and the protocols developed to isolate CTC from large volumes were evaluated in 2 patient studies. In the first study 34 metastatic breast and prostate cancer patients underwent a DLA procedure to obtain a large blood volume. In addition 7.5 mL from a standard blood draw was processed as a golden standard for CTC enumeration. Using DLA instead of blood, for the enumeration of CTC, resulted in a 0 – 32 fold increase in CTC yield. When using the developed depletion protocol to process a large volume of DLA product the yield was even higher. In the second study we evaluated whether the number of CTC, and the number of patients in which CTC are detected can be increased by the use of DLA in non-small cell lung cancer. The number of non-small cell lung cancer patients in which CTC are detected is relatively low compared to other cancers. CTC were detected in 37% of patients in 7.5 mL of blood, in 63% in a small DLA aliquot and 89% in a larger leukocyte depleted DLA aliquot.
We show that a significantly larger number of CTC can be obtained by processing a large blood volume through DLA. Although, the technologies to isolate CTC from the vast amount of mononuclear cells in DLA will need to be improved as during processing of the sample part of the CTC get lost. Processing large volumes while recovering the majority of tumor cells stays a challenge which has to be overcome in order to have a sufficient number of tumor cells to represent a biopsy.
Original languageEnglish
QualificationDoctor of Philosophy
Awarding Institution
  • University of Twente
Supervisors/Advisors
  • Terstappen, Leon, Supervisor
Award date26 Sep 2019
Place of PublicationEnschede
Publisher
Print ISBNs978-90-365-4818-2
DOIs
Publication statusPublished - 26 Sep 2019

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Circulating Neoplastic Cells
Biopsy
Leukapheresis
Neoplasms
Blood Volume
Leukocytes
Cell Size
Blood Cells
Blood Component Removal

Cite this

Andree, K.C.. / Circulating Tumor Cells a Real-Time Liquid Biopsy. Enschede : University of Twente, 2019. 186 p.
@phdthesis{90be1f83f9314cb8945e4198fdd182eb,
title = "Circulating Tumor Cells a Real-Time Liquid Biopsy",
abstract = "Cancer is one of the leading causes of death worldwide. For adequate and effective treatment a correct cancer diagnosis is essential. Traditionally, this is done by means of imaging (e.g. ultrasound, CT, MRI scan) and lab tests followed by confirmation through a biopsy of the tumor. Next to these traditional methods, circulating tumor cells can be isolated from blood and used as a liquid biopsy providing a source of information on the tumor characteristics. Circulating tumor cells (CTC) are cells that shed from a tumor site, enter the bloodstream, spread through the body and can form metastases at distant sites. CTC have important prognostic and therapeutic implications but as their numbers are very small, detection is very difficult. CTC are found in frequencies in the order of 1 - 10 CTC per mL of whole blood in patients with metastatic disease. For comparison, 1 mL of blood contains around 5 million white blood cells and around 5 billion red blood cells. Current technologies, like CellSearch, usually isolate CTC from 7.5 mL of blood. Big advantage over traditional tissue biopsies, where often surgery is required, is that sampling blood for CTC isolation is less invasive and can be done repeatedly thereby allowing a source of real-time information during the course of disease. However, in many patients non or very few CTC are detected in 7.5 mL but predictions suggest that all patients including those who do not have detectable CTC have at least 1 CTC in 5 L of blood. Increasing the processed blood volume would theoretically lead to an overall higher yield of CTC providing a sufficient source of tumor material.In this dissertation we investigated techniques allowing for the isolation and characterization of CTC from large volumes of blood which would be very beneficial for realizing a successful real-time liquid biopsy.First, we looked into techniques where antibody functionalized surfaces, targeting CTC, are used to capture tumor cells from blood. For this, the affinity and epitope binding competition of 4 different α-EpCAM antibodies were measured. Next, the optimal antibody and set-up conditions were determined to capture cells on these surfaces and the successful capture of tumor cells from blood was shown. The advantage is that this approach allows us to flow blood, rather than using static conditions, making it possible to process larger volumes. To characterize tumor cells isolated from blood we developed and evaluated a method using self-seeding microwells to obtain single CTC and assess their potential to proliferate. Using this method we were able to isolate and detect viable CTC from patient blood samples.Next, within the CTCTrap consortium we investigated the use of a therapeutic apheresis, for the collection of CTC from peripheral blood in cancer patients. The goal within this consortium was to develop a new apheresis column to capture CTC and then reintroduce the blood depleted of tumor cells back into the body with the promise to obtain CTC in all metastatic cancer patients. Unfortunately, the device developed in this project showed a very low recovery of tumor cells and a high carryover of leukocytes in the processed samples, resulting in no enrichment of tumor cells. Alternatively, the use of diagnostic leukapheresis (DLA) was introduced. During DLA mononuclear cells, including CTC, are isolated from patient blood, which results in a product of approximately 60 mL which holds the cells of 2 L of blood. This approach allows us to process liters of blood. Various approaches were pursued to process these large blood volumes from leukapheresis products as current technologies can only process a small portion. This resulted in the development of a leukocyte depletion protocol based on the commercially available RosetteSep kit for the isolation of CTC from large volumes. The use of DLA and the protocols developed to isolate CTC from large volumes were evaluated in 2 patient studies. In the first study 34 metastatic breast and prostate cancer patients underwent a DLA procedure to obtain a large blood volume. In addition 7.5 mL from a standard blood draw was processed as a golden standard for CTC enumeration. Using DLA instead of blood, for the enumeration of CTC, resulted in a 0 – 32 fold increase in CTC yield. When using the developed depletion protocol to process a large volume of DLA product the yield was even higher. In the second study we evaluated whether the number of CTC, and the number of patients in which CTC are detected can be increased by the use of DLA in non-small cell lung cancer. The number of non-small cell lung cancer patients in which CTC are detected is relatively low compared to other cancers. CTC were detected in 37{\%} of patients in 7.5 mL of blood, in 63{\%} in a small DLA aliquot and 89{\%} in a larger leukocyte depleted DLA aliquot.We show that a significantly larger number of CTC can be obtained by processing a large blood volume through DLA. Although, the technologies to isolate CTC from the vast amount of mononuclear cells in DLA will need to be improved as during processing of the sample part of the CTC get lost. Processing large volumes while recovering the majority of tumor cells stays a challenge which has to be overcome in order to have a sufficient number of tumor cells to represent a biopsy.",
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language = "English",
isbn = "978-90-365-4818-2",
publisher = "University of Twente",
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Circulating Tumor Cells a Real-Time Liquid Biopsy. / Andree, K.C.

Enschede : University of Twente, 2019. 186 p.

Research output: ThesisPhD Thesis - Research UT, graduation UTAcademic

TY - THES

T1 - Circulating Tumor Cells a Real-Time Liquid Biopsy

AU - Andree, K.C.

PY - 2019/9/26

Y1 - 2019/9/26

N2 - Cancer is one of the leading causes of death worldwide. For adequate and effective treatment a correct cancer diagnosis is essential. Traditionally, this is done by means of imaging (e.g. ultrasound, CT, MRI scan) and lab tests followed by confirmation through a biopsy of the tumor. Next to these traditional methods, circulating tumor cells can be isolated from blood and used as a liquid biopsy providing a source of information on the tumor characteristics. Circulating tumor cells (CTC) are cells that shed from a tumor site, enter the bloodstream, spread through the body and can form metastases at distant sites. CTC have important prognostic and therapeutic implications but as their numbers are very small, detection is very difficult. CTC are found in frequencies in the order of 1 - 10 CTC per mL of whole blood in patients with metastatic disease. For comparison, 1 mL of blood contains around 5 million white blood cells and around 5 billion red blood cells. Current technologies, like CellSearch, usually isolate CTC from 7.5 mL of blood. Big advantage over traditional tissue biopsies, where often surgery is required, is that sampling blood for CTC isolation is less invasive and can be done repeatedly thereby allowing a source of real-time information during the course of disease. However, in many patients non or very few CTC are detected in 7.5 mL but predictions suggest that all patients including those who do not have detectable CTC have at least 1 CTC in 5 L of blood. Increasing the processed blood volume would theoretically lead to an overall higher yield of CTC providing a sufficient source of tumor material.In this dissertation we investigated techniques allowing for the isolation and characterization of CTC from large volumes of blood which would be very beneficial for realizing a successful real-time liquid biopsy.First, we looked into techniques where antibody functionalized surfaces, targeting CTC, are used to capture tumor cells from blood. For this, the affinity and epitope binding competition of 4 different α-EpCAM antibodies were measured. Next, the optimal antibody and set-up conditions were determined to capture cells on these surfaces and the successful capture of tumor cells from blood was shown. The advantage is that this approach allows us to flow blood, rather than using static conditions, making it possible to process larger volumes. To characterize tumor cells isolated from blood we developed and evaluated a method using self-seeding microwells to obtain single CTC and assess their potential to proliferate. Using this method we were able to isolate and detect viable CTC from patient blood samples.Next, within the CTCTrap consortium we investigated the use of a therapeutic apheresis, for the collection of CTC from peripheral blood in cancer patients. The goal within this consortium was to develop a new apheresis column to capture CTC and then reintroduce the blood depleted of tumor cells back into the body with the promise to obtain CTC in all metastatic cancer patients. Unfortunately, the device developed in this project showed a very low recovery of tumor cells and a high carryover of leukocytes in the processed samples, resulting in no enrichment of tumor cells. Alternatively, the use of diagnostic leukapheresis (DLA) was introduced. During DLA mononuclear cells, including CTC, are isolated from patient blood, which results in a product of approximately 60 mL which holds the cells of 2 L of blood. This approach allows us to process liters of blood. Various approaches were pursued to process these large blood volumes from leukapheresis products as current technologies can only process a small portion. This resulted in the development of a leukocyte depletion protocol based on the commercially available RosetteSep kit for the isolation of CTC from large volumes. The use of DLA and the protocols developed to isolate CTC from large volumes were evaluated in 2 patient studies. In the first study 34 metastatic breast and prostate cancer patients underwent a DLA procedure to obtain a large blood volume. In addition 7.5 mL from a standard blood draw was processed as a golden standard for CTC enumeration. Using DLA instead of blood, for the enumeration of CTC, resulted in a 0 – 32 fold increase in CTC yield. When using the developed depletion protocol to process a large volume of DLA product the yield was even higher. In the second study we evaluated whether the number of CTC, and the number of patients in which CTC are detected can be increased by the use of DLA in non-small cell lung cancer. The number of non-small cell lung cancer patients in which CTC are detected is relatively low compared to other cancers. CTC were detected in 37% of patients in 7.5 mL of blood, in 63% in a small DLA aliquot and 89% in a larger leukocyte depleted DLA aliquot.We show that a significantly larger number of CTC can be obtained by processing a large blood volume through DLA. Although, the technologies to isolate CTC from the vast amount of mononuclear cells in DLA will need to be improved as during processing of the sample part of the CTC get lost. Processing large volumes while recovering the majority of tumor cells stays a challenge which has to be overcome in order to have a sufficient number of tumor cells to represent a biopsy.

AB - Cancer is one of the leading causes of death worldwide. For adequate and effective treatment a correct cancer diagnosis is essential. Traditionally, this is done by means of imaging (e.g. ultrasound, CT, MRI scan) and lab tests followed by confirmation through a biopsy of the tumor. Next to these traditional methods, circulating tumor cells can be isolated from blood and used as a liquid biopsy providing a source of information on the tumor characteristics. Circulating tumor cells (CTC) are cells that shed from a tumor site, enter the bloodstream, spread through the body and can form metastases at distant sites. CTC have important prognostic and therapeutic implications but as their numbers are very small, detection is very difficult. CTC are found in frequencies in the order of 1 - 10 CTC per mL of whole blood in patients with metastatic disease. For comparison, 1 mL of blood contains around 5 million white blood cells and around 5 billion red blood cells. Current technologies, like CellSearch, usually isolate CTC from 7.5 mL of blood. Big advantage over traditional tissue biopsies, where often surgery is required, is that sampling blood for CTC isolation is less invasive and can be done repeatedly thereby allowing a source of real-time information during the course of disease. However, in many patients non or very few CTC are detected in 7.5 mL but predictions suggest that all patients including those who do not have detectable CTC have at least 1 CTC in 5 L of blood. Increasing the processed blood volume would theoretically lead to an overall higher yield of CTC providing a sufficient source of tumor material.In this dissertation we investigated techniques allowing for the isolation and characterization of CTC from large volumes of blood which would be very beneficial for realizing a successful real-time liquid biopsy.First, we looked into techniques where antibody functionalized surfaces, targeting CTC, are used to capture tumor cells from blood. For this, the affinity and epitope binding competition of 4 different α-EpCAM antibodies were measured. Next, the optimal antibody and set-up conditions were determined to capture cells on these surfaces and the successful capture of tumor cells from blood was shown. The advantage is that this approach allows us to flow blood, rather than using static conditions, making it possible to process larger volumes. To characterize tumor cells isolated from blood we developed and evaluated a method using self-seeding microwells to obtain single CTC and assess their potential to proliferate. Using this method we were able to isolate and detect viable CTC from patient blood samples.Next, within the CTCTrap consortium we investigated the use of a therapeutic apheresis, for the collection of CTC from peripheral blood in cancer patients. The goal within this consortium was to develop a new apheresis column to capture CTC and then reintroduce the blood depleted of tumor cells back into the body with the promise to obtain CTC in all metastatic cancer patients. Unfortunately, the device developed in this project showed a very low recovery of tumor cells and a high carryover of leukocytes in the processed samples, resulting in no enrichment of tumor cells. Alternatively, the use of diagnostic leukapheresis (DLA) was introduced. During DLA mononuclear cells, including CTC, are isolated from patient blood, which results in a product of approximately 60 mL which holds the cells of 2 L of blood. This approach allows us to process liters of blood. Various approaches were pursued to process these large blood volumes from leukapheresis products as current technologies can only process a small portion. This resulted in the development of a leukocyte depletion protocol based on the commercially available RosetteSep kit for the isolation of CTC from large volumes. The use of DLA and the protocols developed to isolate CTC from large volumes were evaluated in 2 patient studies. In the first study 34 metastatic breast and prostate cancer patients underwent a DLA procedure to obtain a large blood volume. In addition 7.5 mL from a standard blood draw was processed as a golden standard for CTC enumeration. Using DLA instead of blood, for the enumeration of CTC, resulted in a 0 – 32 fold increase in CTC yield. When using the developed depletion protocol to process a large volume of DLA product the yield was even higher. In the second study we evaluated whether the number of CTC, and the number of patients in which CTC are detected can be increased by the use of DLA in non-small cell lung cancer. The number of non-small cell lung cancer patients in which CTC are detected is relatively low compared to other cancers. CTC were detected in 37% of patients in 7.5 mL of blood, in 63% in a small DLA aliquot and 89% in a larger leukocyte depleted DLA aliquot.We show that a significantly larger number of CTC can be obtained by processing a large blood volume through DLA. Although, the technologies to isolate CTC from the vast amount of mononuclear cells in DLA will need to be improved as during processing of the sample part of the CTC get lost. Processing large volumes while recovering the majority of tumor cells stays a challenge which has to be overcome in order to have a sufficient number of tumor cells to represent a biopsy.

U2 - 10.3990/1.9789036548182

DO - 10.3990/1.9789036548182

M3 - PhD Thesis - Research UT, graduation UT

SN - 978-90-365-4818-2

PB - University of Twente

CY - Enschede

ER -