Coupling Simulation and Experiment: The Bimodal Strategy in Integrative Systems Biology

Miles Alexander James MacLeod, Nancy J. Nersessian

    Research output: Contribution to journalArticleAcademicpeer-review

    30 Citations (Scopus)

    Abstract

    The importation of computational methods into biology is generating novel methodological strategies for managing complexity which philosophers are only just starting to explore and elaborate. This paper aims to enrich our understanding of methodology in integrative systems biology, which is developing novel epistemic and cognitive strategies for managing complex problem-solving tasks. We illustrate this through developing a case study of a bimodal researcher from our ethnographic investigation of two systems biology research labs. The researcher constructed models of metabolic and cell-signaling pathways by conducting her own wet-lab experimentation while building simulation models. We show how this coupling of experiment and simulation enabled her to build and validate her models and also triangulate and localize errors and uncertainties in them. This method can be contrasted with the unimodal modeling strategy in systems biology which relies more on mathematical or algorithmic methods to reduce complexity. We discuss the relative affordances and limitations of these strategies, which represent distinct opinions in the field about how to handle the investigation of complex biological systems.
    Original languageEnglish
    Pages (from-to)572-584
    JournalStudies in history and philosophy of science. Part C: Studies in history and philosophy of biological and biomedical sciences
    Volume44
    Issue number4, Part A
    DOIs
    Publication statusPublished - 2013

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