Designing Workflows on the Fly Using e-BioFlow

I. Wassink; Matthijs Ooms; P.E. van der Vet

doi:10.1007/978-3-642-10383-4_35

Designing Workflows on the Fly Using e-BioFlow

I. Wassink, Matthijs Ooms, P.E. van der Vet

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

6 Citations (Scopus)

Abstract

Abstract. Life scientists use workflow systems for service orchestration to design their computer based experiments. These workflow systems require life scientists to design complete workflows before they can be run. Traditional workflow systems not support the explorative research approach life scientists prefer. In life science, it often happens that few steps are known in advance. Even if these steps are known, connecting these tasks still remains difficult. We have extended the e-BioFlow workflow system with an ad-hoc editor to support on-the-fly workflow design. This ad-hoc editor enables an ad-hoc design of the workflow with no predetermined plan of the final workflow. Users can execute partial workflows and extend these workflows using intermediate results. The ad-hoc editor enables its users to explore data and tasks representing tools and web services, in order to debug the workflow and to optimise parameter settings. Furthermore, it guides its users to find and connect compatible tasks. The result is a new workflow editor that simplifies workflow design and

Original language	Undefined
Title of host publication	Service-Oriented Computing
Editors	Luciano Baresi, Chihung Chi, Jun Suzuki
Place of Publication	Berlin
Publisher	Springer
Pages	470-484
Number of pages	15
ISBN (Print)	978-3-642-10382-7
DOIs	https://doi.org/10.1007/978-3-642-10383-4_35
Publication status	Published - Nov 2009
Event	7th International Joint Conference on Service-Oriented Computing, ICSOC-ServiceWave - Stockholm, Sweden Duration: 23 Nov 2009 → 27 Nov 2009

Publication series

Name	Lecture Notes in Computer Science
Publisher	Springer Verlag
Volume	5900/2009
ISSN (Print)	0302-9743
ISSN (Electronic)	1611-3349

Conference

Conference	7th International Joint Conference on Service-Oriented Computing, ICSOC-ServiceWave
Period	23/11/09 → 27/11/09
Other	23-27 Nov 2009

Keywords

IR-68648
EWI-16574
HMI-HF: Human Factors
METIS-264176

Access to Document

10.1007/978-3-642-10383-4_35

http://eprints.eemcs.utwente.nl/secure2/16574/01/paper.pdf

Cite this

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title = "Designing Workflows on the Fly Using e-BioFlow",

abstract = "Abstract. Life scientists use workflow systems for service orchestration to design their computer based experiments. These workflow systems require life scientists to design complete workflows before they can be run. Traditional workflow systems not support the explorative research approach life scientists prefer. In life science, it often happens that few steps are known in advance. Even if these steps are known, connecting these tasks still remains difficult. We have extended the e-BioFlow workflow system with an ad-hoc editor to support on-the-fly workflow design. This ad-hoc editor enables an ad-hoc design of the workflow with no predetermined plan of the final workflow. Users can execute partial workflows and extend these workflows using intermediate results. The ad-hoc editor enables its users to explore data and tasks representing tools and web services, in order to debug the workflow and to optimise parameter settings. Furthermore, it guides its users to find and connect compatible tasks. The result is a new workflow editor that simplifies workflow design and",

keywords = "IR-68648, EWI-16574, HMI-HF: Human Factors, METIS-264176",

author = "I. Wassink and Matthijs Ooms and {van der Vet}, P.E.",

note = "10.1007/978-3-642-10383-4_35 ; null ; Conference date: 23-11-2009 Through 27-11-2009",

year = "2009",

month = nov,

doi = "10.1007/978-3-642-10383-4_35",

language = "Undefined",

isbn = "978-3-642-10382-7",

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publisher = "Springer",

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Wassink, I, Ooms, M & van der Vet, PE 2009, Designing Workflows on the Fly Using e-BioFlow. in L Baresi, C Chi & J Suzuki (eds), Service-Oriented Computing., 10.1007/978-3-642-10383-4_35, Lecture Notes in Computer Science, vol. 5900/2009, Springer, Berlin, pp. 470-484, 7th International Joint Conference on Service-Oriented Computing, ICSOC-ServiceWave, 23/11/09. https://doi.org/10.1007/978-3-642-10383-4_35

Designing Workflows on the Fly Using e-BioFlow. / Wassink, I.; Ooms, Matthijs; van der Vet, P.E.

Service-Oriented Computing. ed. / Luciano Baresi; Chihung Chi; Jun Suzuki. Berlin : Springer, 2009. p. 470-484 10.1007/978-3-642-10383-4_35 (Lecture Notes in Computer Science; Vol. 5900/2009).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review

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AB - Abstract. Life scientists use workflow systems for service orchestration to design their computer based experiments. These workflow systems require life scientists to design complete workflows before they can be run. Traditional workflow systems not support the explorative research approach life scientists prefer. In life science, it often happens that few steps are known in advance. Even if these steps are known, connecting these tasks still remains difficult. We have extended the e-BioFlow workflow system with an ad-hoc editor to support on-the-fly workflow design. This ad-hoc editor enables an ad-hoc design of the workflow with no predetermined plan of the final workflow. Users can execute partial workflows and extend these workflows using intermediate results. The ad-hoc editor enables its users to explore data and tasks representing tools and web services, in order to debug the workflow and to optimise parameter settings. Furthermore, it guides its users to find and connect compatible tasks. The result is a new workflow editor that simplifies workflow design and

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