Abstract
| Original language | Undefined |
|---|---|
| Title of host publication | Information Technology in Bio- and Medical Informatics, ITBAM 2010 |
| Editors | Sami Khuri, Lenka Lhotská, Nadia Pisanti |
| Place of Publication | Berlin |
| Publisher | Springer |
| Pages | 1-15 |
| Number of pages | 15 |
| ISBN (Print) | 978-3-642-15019-7 |
| DOIs | |
| Publication status | Published - 2010 |
Publication series
| Name | Lecture Notes in Computer Science |
|---|---|
| Publisher | Springer Verlag |
| Volume | 6266 |
| ISSN (Print) | 0302-9743 |
| ISSN (Electronic) | 1611-3349 |
Keywords
- METIS-271014
- HMI-IE: Information Engineering
- EWI-18375
- IR-72923
Cite this
}
e-BioFlow: Improving practical use of workflow systems in bioinformatics. / Wassink, I.; Ooms, Matthijs; Neerincx, Pieter; van der Veer, Gerrit C.; Rauwerda, Han; Leunissen, Jack A.M.; Breit, Timo M.; Nijholt, Antinus; van der Vet, P.E.
Information Technology in Bio- and Medical Informatics, ITBAM 2010. ed. / Sami Khuri; Lenka Lhotská; Nadia Pisanti. Berlin : Springer, 2010. p. 1-15 (Lecture Notes in Computer Science; Vol. 6266).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › Academic › peer-review
TY - GEN
T1 - e-BioFlow: Improving practical use of workflow systems in bioinformatics
AU - Wassink, I.
AU - Ooms, Matthijs
AU - Neerincx, Pieter
AU - van der Veer, Gerrit C.
AU - Rauwerda, Han
AU - Leunissen, Jack A.M.
AU - Breit, Timo M.
AU - Nijholt, Antinus
AU - van der Vet, P.E.
N1 - 10.1007/978-3-642-15020-3_1
PY - 2010
Y1 - 2010
N2 - Workflow management systems (WfMSs) are useful tools for bioinformaticians. As experiences with using WfMSs accumulate, shortcomings of current systems become apparent. In this paper, we focus on practical issues that hinder WfMS users and that arise in the design and execution of workflows, and in access of web services. We present e-BioFlow, a workflow engine that demonstrates in which way a number of these problems can be solved. e-BioFlow offers an improved user interface, can deal with large data volumes, stores all provenance, and has a powerful provenance browser. e-BioFlow also offers the possibility to design and run workflows step by step, allowing its users an explorative research style.
AB - Workflow management systems (WfMSs) are useful tools for bioinformaticians. As experiences with using WfMSs accumulate, shortcomings of current systems become apparent. In this paper, we focus on practical issues that hinder WfMS users and that arise in the design and execution of workflows, and in access of web services. We present e-BioFlow, a workflow engine that demonstrates in which way a number of these problems can be solved. e-BioFlow offers an improved user interface, can deal with large data volumes, stores all provenance, and has a powerful provenance browser. e-BioFlow also offers the possibility to design and run workflows step by step, allowing its users an explorative research style.
KW - METIS-271014
KW - HMI-IE: Information Engineering
KW - EWI-18375
KW - IR-72923
U2 - 10.1007/978-3-642-15020-3_1
DO - 10.1007/978-3-642-15020-3_1
M3 - Conference contribution
SN - 978-3-642-15019-7
T3 - Lecture Notes in Computer Science
SP - 1
EP - 15
BT - Information Technology in Bio- and Medical Informatics, ITBAM 2010
A2 - Khuri, Sami
A2 - Lhotská, Lenka
A2 - Pisanti, Nadia
PB - Springer
CY - Berlin
ER -