Quantitative Characterization of Protein Nanostructures Using Atomic Force Microscopy

Gezina M.J. Segers-Nolten, Kees van der Werf, M.E. van Raaij, Vinod Subramaniam

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

6 Citations (Scopus)
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Abstract

The aggregation of proteins into fibrillar structures called amyloid is a characteristic of many diseases, including several neurodegenerative disorders. Although amyloid formation is inherent to several serious diseases, the mechanism of fibril formation and the modes of toxicity are not yet known. High concentrations of fibrillar aggregates of alpha-synuclein protein are found in the brains of patients suffering from Parkinson's disease. We exploit different contrast modes of high resolution atomic force microscopy (AFM) on fibrils formed by the wild-type alpha-synuclein protein, and by the familial disease-related A30P, E46K and A53T variants, to get more insight into the in vitro process of fibril assembly. From quantitative analysis of height images measured in tapping mode AFM, we obtained data that are compatible with a twisted hierarchical assembly model [1] for all protein variants. The E46K mutant displays the most distinct and smallest periodicity. The modulation depth for all mutants is very similar, and is smaller for wild-type protein commensurate with the lower fibril height. The detailed morphology observed in phase images indicates however that fibrils may also be formed through the association of fibril segments. To study the mechanical properties of fibrils we applied force while scanning in contact mode, resulting in characteristic deformation of protein fibrils with a periodicity corresponding to the modulation observed in tapping mode. Our observations suggest that the hierarchical assembly model may not be the exclusive mechanism of alpha-synuclein fibril assembly, but that multiple modes of fibril assembly play a role in alpha-synuclein fibril formation.
Original languageUndefined
Title of host publicationProceedings of the 29th Annual International Conference of the IEEE EMBS
PublisherIEEE
Pages6608-6611
Number of pages5
ISBN (Print)9781424407873
DOIs
Publication statusPublished - 2007
Event29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2007 - Convention Center, 'Cité Internationale', Lyon, France
Duration: 23 Aug 200726 Aug 2017
Conference number: 29

Publication series

Name
PublisherIEEE
VolumeSuB06.1

Conference

Conference29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2007
Abbreviated titleEMBC
CountryFrance
CityLyon
Period23/08/0726/08/17

Keywords

  • IR-60299
  • METIS-242491

Cite this

Segers-Nolten, G. M. J., van der Werf, K., van Raaij, M. E., & Subramaniam, V. (2007). Quantitative Characterization of Protein Nanostructures Using Atomic Force Microscopy. In Proceedings of the 29th Annual International Conference of the IEEE EMBS (pp. 6608-6611). IEEE. https://doi.org/10.1109/IEMBS.2007.4353874
Segers-Nolten, Gezina M.J. ; van der Werf, Kees ; van Raaij, M.E. ; Subramaniam, Vinod. / Quantitative Characterization of Protein Nanostructures Using Atomic Force Microscopy. Proceedings of the 29th Annual International Conference of the IEEE EMBS. IEEE, 2007. pp. 6608-6611
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abstract = "The aggregation of proteins into fibrillar structures called amyloid is a characteristic of many diseases, including several neurodegenerative disorders. Although amyloid formation is inherent to several serious diseases, the mechanism of fibril formation and the modes of toxicity are not yet known. High concentrations of fibrillar aggregates of alpha-synuclein protein are found in the brains of patients suffering from Parkinson's disease. We exploit different contrast modes of high resolution atomic force microscopy (AFM) on fibrils formed by the wild-type alpha-synuclein protein, and by the familial disease-related A30P, E46K and A53T variants, to get more insight into the in vitro process of fibril assembly. From quantitative analysis of height images measured in tapping mode AFM, we obtained data that are compatible with a twisted hierarchical assembly model [1] for all protein variants. The E46K mutant displays the most distinct and smallest periodicity. The modulation depth for all mutants is very similar, and is smaller for wild-type protein commensurate with the lower fibril height. The detailed morphology observed in phase images indicates however that fibrils may also be formed through the association of fibril segments. To study the mechanical properties of fibrils we applied force while scanning in contact mode, resulting in characteristic deformation of protein fibrils with a periodicity corresponding to the modulation observed in tapping mode. Our observations suggest that the hierarchical assembly model may not be the exclusive mechanism of alpha-synuclein fibril assembly, but that multiple modes of fibril assembly play a role in alpha-synuclein fibril formation.",
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author = "Segers-Nolten, {Gezina M.J.} and {van der Werf}, Kees and {van Raaij}, M.E. and Vinod Subramaniam",
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Segers-Nolten, GMJ, van der Werf, K, van Raaij, ME & Subramaniam, V 2007, Quantitative Characterization of Protein Nanostructures Using Atomic Force Microscopy. in Proceedings of the 29th Annual International Conference of the IEEE EMBS. IEEE, pp. 6608-6611, 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, EMBC 2007, Lyon, France, 23/08/07. https://doi.org/10.1109/IEMBS.2007.4353874

Quantitative Characterization of Protein Nanostructures Using Atomic Force Microscopy. / Segers-Nolten, Gezina M.J.; van der Werf, Kees; van Raaij, M.E.; Subramaniam, Vinod.

Proceedings of the 29th Annual International Conference of the IEEE EMBS. IEEE, 2007. p. 6608-6611.

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademicpeer-review

TY - GEN

T1 - Quantitative Characterization of Protein Nanostructures Using Atomic Force Microscopy

AU - Segers-Nolten, Gezina M.J.

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AU - van Raaij, M.E.

AU - Subramaniam, Vinod

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N2 - The aggregation of proteins into fibrillar structures called amyloid is a characteristic of many diseases, including several neurodegenerative disorders. Although amyloid formation is inherent to several serious diseases, the mechanism of fibril formation and the modes of toxicity are not yet known. High concentrations of fibrillar aggregates of alpha-synuclein protein are found in the brains of patients suffering from Parkinson's disease. We exploit different contrast modes of high resolution atomic force microscopy (AFM) on fibrils formed by the wild-type alpha-synuclein protein, and by the familial disease-related A30P, E46K and A53T variants, to get more insight into the in vitro process of fibril assembly. From quantitative analysis of height images measured in tapping mode AFM, we obtained data that are compatible with a twisted hierarchical assembly model [1] for all protein variants. The E46K mutant displays the most distinct and smallest periodicity. The modulation depth for all mutants is very similar, and is smaller for wild-type protein commensurate with the lower fibril height. The detailed morphology observed in phase images indicates however that fibrils may also be formed through the association of fibril segments. To study the mechanical properties of fibrils we applied force while scanning in contact mode, resulting in characteristic deformation of protein fibrils with a periodicity corresponding to the modulation observed in tapping mode. Our observations suggest that the hierarchical assembly model may not be the exclusive mechanism of alpha-synuclein fibril assembly, but that multiple modes of fibril assembly play a role in alpha-synuclein fibril formation.

AB - The aggregation of proteins into fibrillar structures called amyloid is a characteristic of many diseases, including several neurodegenerative disorders. Although amyloid formation is inherent to several serious diseases, the mechanism of fibril formation and the modes of toxicity are not yet known. High concentrations of fibrillar aggregates of alpha-synuclein protein are found in the brains of patients suffering from Parkinson's disease. We exploit different contrast modes of high resolution atomic force microscopy (AFM) on fibrils formed by the wild-type alpha-synuclein protein, and by the familial disease-related A30P, E46K and A53T variants, to get more insight into the in vitro process of fibril assembly. From quantitative analysis of height images measured in tapping mode AFM, we obtained data that are compatible with a twisted hierarchical assembly model [1] for all protein variants. The E46K mutant displays the most distinct and smallest periodicity. The modulation depth for all mutants is very similar, and is smaller for wild-type protein commensurate with the lower fibril height. The detailed morphology observed in phase images indicates however that fibrils may also be formed through the association of fibril segments. To study the mechanical properties of fibrils we applied force while scanning in contact mode, resulting in characteristic deformation of protein fibrils with a periodicity corresponding to the modulation observed in tapping mode. Our observations suggest that the hierarchical assembly model may not be the exclusive mechanism of alpha-synuclein fibril assembly, but that multiple modes of fibril assembly play a role in alpha-synuclein fibril formation.

KW - IR-60299

KW - METIS-242491

U2 - 10.1109/IEMBS.2007.4353874

DO - 10.1109/IEMBS.2007.4353874

M3 - Conference contribution

SN - 9781424407873

SP - 6608

EP - 6611

BT - Proceedings of the 29th Annual International Conference of the IEEE EMBS

PB - IEEE

ER -

Segers-Nolten GMJ, van der Werf K, van Raaij ME, Subramaniam V. Quantitative Characterization of Protein Nanostructures Using Atomic Force Microscopy. In Proceedings of the 29th Annual International Conference of the IEEE EMBS. IEEE. 2007. p. 6608-6611 https://doi.org/10.1109/IEMBS.2007.4353874